PhytophthoraV1, Main, Exploration, bibRecord, 000757

Genome-wide identification of the auxin/indole-3-acetic acid (Aux/IAA) gene family in pepper, its characterisation, and comprehensive expression profiling under environmental and phytohormones stress.

Identifieur interne : 000757 ( Main/Exploration ); précédent : 000756; suivant : 000758

Genome-wide identification of the auxin/indole-3-acetic acid (Aux/IAA) gene family in pepper, its characterisation, and comprehensive expression profiling under environmental and phytohormones stress.

Auteurs : Muhammad Waseem [République populaire de Chine] ; Fiaz Ahmad [Pakistan] ; Sidra Habib [République populaire de Chine] ; Zhengguo Li [République populaire de Chine]

Source :

Scientific reports [ 2045-2322 ] ; 2018.

RBID : pubmed:30104758

Descripteurs français

English descriptors

KwdEn :
- Chromosome Mapping (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (immunology), Genes, Plant (genetics), Host-Pathogen Interactions (genetics), Host-Pathogen Interactions (immunology), Indoleacetic Acids (immunology), Indoleacetic Acids (metabolism), Multigene Family (genetics), Phytophthora (immunology), Piper nigrum (genetics), Piper nigrum (microbiology), Plant Growth Regulators (immunology), Plant Growth Regulators (metabolism), Plant Proteins (genetics), Plant Proteins (immunology), Plant Proteins (metabolism), Potyvirus (immunology), Sequence Analysis, RNA (MeSH).
MESH :
- chemical , genetics : Plant Proteins.
- chemical , immunology : Indoleacetic Acids, Plant Growth Regulators, Plant Proteins.
- genetics : Genes, Plant, Host-Pathogen Interactions, Multigene Family, Piper nigrum.
- immunology : Gene Expression Regulation, Plant, Host-Pathogen Interactions, Phytophthora, Potyvirus.
- chemical , metabolism : Indoleacetic Acids, Plant Growth Regulators, Plant Proteins.
- microbiology : Piper nigrum.
- Chromosome Mapping, Gene Expression Profiling, Sequence Analysis, RNA.

Abstract

Auxin is an essential phytohormone that plays a crucial role in the growth and development of plants in stressful environments. Here, we analysed the auxin/indole-3-acetic acid (Aux/IAA) gene family, which produces auxin in pepper, and succeeded in identifying 27 putative members containing four conserved domains (I. II. III and IV) in their protein sequences. Sequence analysis, chromosomal mapping and motif prediction of all identified CaAux/IAA genes were performed. It was observed that these genes contained four conserved motifs divided into nine different groups and distributed across nine chromosomes in pepper plants. RNA-seq analysis revealed the organ specific expression of many CaAux/IAA genes. However, the majority of genes were expressed with high expression levels in the early stages of fruit development. However, the maximum expression level of the CA03g34540 gene was observed in the breaker stage. Moreover, thirteen CaAux/IAA genes were labelled as early responsive genes to various phytohormone and abiotic stresses. Furthermore, RNA-seq analysis in response to pathogen inoculation (PepMoV, TMV strains P0/P1, and Phytophthora capsici) showed distinct expression profiles of all identified genes, suggesting the diverse expression nature of genes under these stress conditions. Overall, this study provides insight into the dynamic response of CaAux/IAA genes under environmental and phytohormones stress conditions, providing bases to further explore the importance of these genes through mutant/transgenic analysis in pepper.

DOI: 10.1038/s41598-018-30468-9
PubMed: 30104758
PubMed Central: PMC6089902

Affiliations:

Pakistan, République populaire de Chine

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Genes, Plant (genetics)</term>
<term>Host-Pathogen Interactions (genetics)</term>
<term>Host-Pathogen Interactions (immunology)</term>
<term>Indoleacetic Acids (immunology)</term>
<term>Indoleacetic Acids (metabolism)</term>
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<term>Phytophthora (immunology)</term>
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<term>Piper nigrum (microbiology)</term>
<term>Plant Growth Regulators (immunology)</term>
<term>Plant Growth Regulators (metabolism)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (immunology)</term>
<term>Plant Proteins (metabolism)</term>
<term>Potyvirus (immunology)</term>
<term>Sequence Analysis, RNA (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Acides indolacétiques (immunologie)</term>
<term>Acides indolacétiques (métabolisme)</term>
<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Analyse de séquence d'ARN (MeSH)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Facteur de croissance végétal (immunologie)</term>
<term>Facteur de croissance végétal (métabolisme)</term>
<term>Famille multigénique (génétique)</term>
<term>Gènes de plante (génétique)</term>
<term>Interactions hôte-pathogène (génétique)</term>
<term>Interactions hôte-pathogène (immunologie)</term>
<term>Phytophthora (immunologie)</term>
<term>Piper nigrum (génétique)</term>
<term>Piper nigrum (microbiologie)</term>
<term>Potyvirus (immunologie)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (immunologie)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (immunologie)</term>
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<term>Plant Proteins</term>
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<term>Host-Pathogen Interactions</term>
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<term>Piper nigrum</term>
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<term>Interactions hôte-pathogène</term>
<term>Piper nigrum</term>
<term>Protéines végétales</term>
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<term>Facteur de croissance végétal</term>
<term>Interactions hôte-pathogène</term>
<term>Phytophthora</term>
<term>Potyvirus</term>
<term>Protéines végétales</term>
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<front><div type="abstract" xml:lang="en">Auxin is an essential phytohormone that plays a crucial role in the growth and development of plants in stressful environments. Here, we analysed the auxin/indole-3-acetic acid (Aux/IAA) gene family, which produces auxin in pepper, and succeeded in identifying 27 putative members containing four conserved domains (I. II. III and IV) in their protein sequences. Sequence analysis, chromosomal mapping and motif prediction of all identified CaAux/IAA genes were performed. It was observed that these genes contained four conserved motifs divided into nine different groups and distributed across nine chromosomes in pepper plants. RNA-seq analysis revealed the organ specific expression of many CaAux/IAA genes. However, the majority of genes were expressed with high expression levels in the early stages of fruit development. However, the maximum expression level of the CA03g34540 gene was observed in the breaker stage. Moreover, thirteen CaAux/IAA genes were labelled as early responsive genes to various phytohormone and abiotic stresses. Furthermore, RNA-seq analysis in response to pathogen inoculation (PepMoV, TMV strains P0/P1, and Phytophthora capsici) showed distinct expression profiles of all identified genes, suggesting the diverse expression nature of genes under these stress conditions. Overall, this study provides insight into the dynamic response of CaAux/IAA genes under environmental and phytohormones stress conditions, providing bases to further explore the importance of these genes through mutant/transgenic analysis in pepper.</div>
</front>
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<Abstract><AbstractText>Auxin is an essential phytohormone that plays a crucial role in the growth and development of plants in stressful environments. Here, we analysed the auxin/indole-3-acetic acid (Aux/IAA) gene family, which produces auxin in pepper, and succeeded in identifying 27 putative members containing four conserved domains (I. II. III and IV) in their protein sequences. Sequence analysis, chromosomal mapping and motif prediction of all identified CaAux/IAA genes were performed. It was observed that these genes contained four conserved motifs divided into nine different groups and distributed across nine chromosomes in pepper plants. RNA-seq analysis revealed the organ specific expression of many CaAux/IAA genes. However, the majority of genes were expressed with high expression levels in the early stages of fruit development. However, the maximum expression level of the CA03g34540 gene was observed in the breaker stage. Moreover, thirteen CaAux/IAA genes were labelled as early responsive genes to various phytohormone and abiotic stresses. Furthermore, RNA-seq analysis in response to pathogen inoculation (PepMoV, TMV strains P0/P1, and Phytophthora capsici) showed distinct expression profiles of all identified genes, suggesting the diverse expression nature of genes under these stress conditions. Overall, this study provides insight into the dynamic response of CaAux/IAA genes under environmental and phytohormones stress conditions, providing bases to further explore the importance of these genes through mutant/transgenic analysis in pepper.</AbstractText>
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<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Zhengguo</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>School of Life Sciences, Chongqing University, Shapingba, Chongqing, China. zhengguoli@cqu.edu.cn.</Affiliation>
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Genome-wide identification of the auxin/indole-3-acetic acid (Aux/IAA) gene family in pepper, its characterisation, and comprehensive expression profiling under environmental and phytohormones stress.

Genome-wide identification of the auxin/indole-3-acetic acid (Aux/IAA) gene family in pepper, its characterisation, and comprehensive expression profiling under environmental and phytohormones stress.

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